Alycen Wiacek Successfully Defended Her PhD Dissertation

Congratulations to PULSE Lab member Dr. Alycen Wiacek! She successfully defended her PhD dissertation on June 1, 2021. Her defense presentation was entitled Coherence-Based Ultrasound and Photoacoustic Imaging with Applications in Breast Mass Diagnosis and Hysterectomy Guidance. Alycen secured a tenure-track Assistant Professor position at her alma mater, Oakland University, and her post-graduate plans are to assume this new position in Fall 2022.

Prof. Bell Installed as the John C. Malone Professor

Prof. Bell was installed as the John C. Malone Professor on Monday, May 16, 2022. The John C. Malone Professorship was endowed through the generosity of John C. Malone ’64, ’69 to support outstanding Whiting School faculty members within the Malone Center for Engineering in Healthcare. Family, friends, colleagues, and students gathered together to celebrate this momentous occasion. The event was live-streamed, and the recording is available on YouTube.

Aurun Nair, PhD Returns for Doctoral Hooding Ceremony

We are thrilled to welcome PULSE Lab alum Arun Nair, PhD back to the university campus for the Whiting School of Engineering doctoral hooding ceremony! Congratulations to Dr. Nair on this momentous occasion!

Mardava Completed the ECE Department Preliminary Research Proposal Seminar

Congratulations to Mardava Gubbi on his successful completion of the ECE Department preliminary thesis research proposal and seminar requirement!

The topics discussed in Mardava’s seminar are summarized in the following peer-reviewed publications:

  1. Gubbi MR, Bell MAL, Deep Learning-Based Photoacoustic Visual Servoing: Using Outputs from Raw Sensor Data as Inputs to a Robot Controller, IEEE International Conference on Robotics and Automation (ICRA), Xi’an, China, May 30 – June 5, 2021 [pdf]
  2. Gubbi MR, Gonzalez EA, Bell MAL,Theoretical Framework to Predict Generalized Contrast-to-Noise Ratios of Photoacoustic Images With Applications to Computer Vision,” IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 69(6):2098-2114, 2022 [pdf]
  3. Kempski KM, Graham MT, Gubbi MR, Palmer T, Bell MAL, Application of the generalized contrast-to-noise ratio to assess photoacoustic image quality, Biomedical Optics Express11(7), 3684-3698, 2020 [pdf]
  4. Graham M, Assis F, Allman D, Wiacek A, González E, Gubbi M, Dong J, Hou H, Beck S, Chrispin J, Bell MAL, In vivo demonstration of photoacoustic image guidance and robotic visual servoing for cardiac catheter-based interventions, IEEE Transactions on Medical Imaging, 39(4):1015-1029, 2020 [pdf]

Alycen Wiacek Wins AIUM New Investigator Award

Congratulations to Alycen Wiacek for winning the New Investigator Award from the American Institute of Ultrasound in Medicine (AIUM)! Alycen was selected to present her research in the New Investigator Scientific Session Plenary at the AIUM 2022 Annual Meeting. She discussed her three first-author papers on the clinical implications of spatial coherence features for breast ultrasound:

  1. Wiacek A, Rindal OMH, Falomo E, Myers K, Fabrega-Foster K, Harvey S, Bell MAL, Robust Short-Lag Spatial Coherence Imaging of Breast Ultrasound Data: Initial Clinical Results, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 66(3):527-540, 2019 [pdf]
  2. Wiacek A, Oluyemi E, Myers K, Mullen L, Bell MAL, Coherence-based beamforming increases the diagnostic certainty of distinguishing fluid from solid masses in breast ultrasound exams, Ultrasound in Medicine and Biology, 46(6):1380-1394, 2020 [pdf]
  3. Wiacek A, Oluyemi E, Myers K, Mullen L, Bell MAL, Coherence-based beamforming improves the diagnostic certainty of breast ultrasound exams, Proceedings of the 2020 IEEE International Ultrasonics Symposium, Virtual, September 6-11, 2020 [pdf]

Alycen was selected as the winner of this symposium, alongside Prof. Brooks Lindsey from Georgia Institute of Technology.

Prof. Bell Elected to AIMBE College of Fellows

Congratulations to Prof. Muyinatu Bell on her election to the American Institute for Medical and Biological Engineering (AIMBE) College of Fellows! AIMBE Fellows represent the top 2% of medical and biological engineers. In addition, Prof. Bell is one of only four Assistant Professors to be elected at this career stage, out of 1,500 fellows elected in the past 10 years! This significant achievement highlights Prof. Bell’s outstanding research contributions and impactful advocacy for her field.

Prof. Bell was nominated, reviewed, and elected by peers and members of the AIMBE College of Fellows for pioneering contributions to development of ultrasonic and photoacoustic medical imaging systems, including coherence-based beamforming, photoacoustic-guided surgery, and deep learning applications.

AIMBE News Release

BME Department Announcement 

WSE Announcement 

HEMI Announcement 

Malone Center Announcement

IEEE UFFC-S Announcement 

Application of gCNR to Photoacoustic Imaging is a Top-Cited Paper

Published less than two years ago in June 2020, Application of the generalized contrast-to-noise ratio to assess photoacoustic image quality received the honor of being a top-cited paper in the journal Biomedical Optics Express in January 2022. This paper investigates a newly developed, probability-based, generalized contrast-to-noise (gCNR) when applied to photoacoustic images. We recommend gCNR as a new standard for assessment of novel photoacoustic beamforming and image formation techniques.

Congratulations to Kelley, Michelle, Mardava, Theron, and Prof. Bell for contributing this foundational development for the photoacoustics and biomedical optics community!

Four Abstracts Accepted to SPIE

Four PULSE Lab abstracts were accepted to various SPIE conferences this year.

SPIE Photonics West took place January 22-27, 2022, and the following work was presented by Michelle and Eduardo.

SPIE Medical Imaging will take place February 20-24, 2022, and the following work will be presented by Ben Frey.

In addition, Prof. Bell was invited to speak at SPIE Optics + Photonics, which will take place August 22-25, 2022, where she will deliver the presentation:

  • Bell MAL, Ultrasound Image Formation in the Deep Learning Age, SPIE Optics + Photonics, Emerging Topics in Artificial Intelligence, San Diego, California, August 22-25, 2022

Prof. Bell Joins the Editorial Advisory Board of GEN Biotechnology

GEN Biotechnology is a new peer-reviewed journal launching in early 2022, focused on exceptional groundbreaking research across all aspects of biotechnology. Prof. Bell is one of the inaugural members of the Editorial Advisory Board. Submission instructions for your groundbreaking biotechnology research that validates and showcases advances in technology development and scientific and medical applications are available here.

Mardava Presents at the Maryland STEM Festival

Congratulations to Mardava Gubbi for successfully disseminating his work to the general public at the 2021 Maryland STEM Festival! The event was live streamed with the recording now available on Youtube. Mardava was the first of 5 presenters.

Mardava describes work that was also presented to a technical audience at the 2021 IEEE International Conference on Robotics and Automation (ICRA). His associated peer-reviewed conference paper is entitled, “Deep Learning-Based Photoacoustic Visual Servoing: Using Outputs from Raw Sensor Data as Inputs to a Robot Controller.”

PULSE Lab ICRA Announcement

JHU Hub Article

Alycen and Jessica Named ARCS Foundation Scholars

Alycen Wiacek and Jessica Su each received the distinction of being selected as scholars of the Achievement Rewards for College Scientists (ARCS) Foundation, Metropolitan Washington Chapter, for the 2021-2022 academic year. Jessica is the 2021-2022 Bill & Marilynn Sweetser Undergraduate Scholar. Alycen is the 2021-2022 JCM Foundation Graduate Scholar. Congratulations Alycen and Jessica!

JHU ECE Department Announcement

Alycen Wiacek Named 2022 Siebel Scholar

Congratulations to Alycen Wiacek! She was named to the 2022 Class of Siebel Scholars — a highly selective group of individuals representing the top graduate students in the world. Alycen was recognized in the bioengineering category, and she is the only student not enrolled in the JHU BME PhD program to be recognized in this category this year. Alycen is also the first JHU ECE PhD student to receive this outstanding recognition. 

 

Businesswire Announcement

JHU Hub Announcement

JHU ECE Department Announcement

Five Abstracts Accepted to IEEE IUS 2021 & Prof. Bell Co-Hosts Annual WIE Event


The following PULSE Lab abstracts were accepted for presentation during the 2021 IEEE International Ultrasonics Symposium (IUS) to be held on September 11-16, 2021 online (due to COVID-19).

  1. A Beamformer-Independent Method to Predict Photoacoustic Visual Servoing System Failure from a Single Image Frame to be presented by Eduardo González in the session entitled Imaging & Image Enhancement & Decluttering II (PM) to
  2. Comparison of Compressional and Elastic Photoacoustic Simulations for Planning, Imaging, and Guidance of Neurosurgeries to be presented by Michelle Graham in the session entitled Photoacoustic Imaging III (PM) to
  3. Quantifying the Impact of Breast Density on the Lag-One Coherence of Hypoechoic Masses to be presented by Alycen Wiacek in the session entitled Beamforming Methodologies & Devices (PM) to
  4. A Method to Estimate the Spatial Coherence of Photoacoustic Channel Data Without Access to Channel Data to be presented by Kelley Kempski & Mardava Gubbi in the session entitled Beamforming Methodologies & Devices (PM)  to
  5. Extending CohereNet to Retain Physical Features When Classifying Benign or Malignant Breast Masses to be presented by Alycen Wiacek in the session entitled Tissue Characterization II (PM) to

Congrats to Alycen, Eduardo, Michelle, Kelley, and Mardava!

In addition to co-authoring the above publications:

Symposium website: https://2021.ieee-ius.org

PULSE Lab REU Student Wins 2nd Place Presentation Award

Congrats to Benjamin Frey! He was our summer Research Experience for Undergraduates (REU) student who conducted a virtual summer research project with us. His research topic was centered on deep learning applied to lung ultrasound imaging of COVID-19 patients. His outstanding work earned him a second place presentation award at the 2021 Computational Sensing and Medical Robotics (CSMR) REU Final Presentations Award Ceremony. Ben joins a long list of PULSE Lab REU students to win this award.

Special thanks to Ben’s postdoc mentor, Lingyi Zhao, for helping to make Ben’s project such a resounding success!

Photoacoustic-Guided Surgery Review is a Top 10 Download

Within its first month of publication, Photoacoustic-Guided Surgery from Head to Toe, an invited review co-authored by Alycen Wiacek and Prof. Bell, received the honor of being a top 10 download from the journal Biomedical Optics Express. This invited review covers multiple aspects of the use of photoacoustic imaging to guide both surgical and related non-surgical interventions and includes a discussion of complete systems and tools needed to maximize success.

Congratulations to Alycen and Prof. Bell for capturing the attention of the biomedical optics community!

Arun Nair Successfully Defended His PhD Dissertation

Congratulations to PULSE Lab member Dr. Arun Nair! He successfully defended his PhD dissertation on May 25, 2021. Arun was co-advised by ECE Profs. Bell and Tran. His defense presentation was entitled Machine Learning for Beamforming in Ultrasound, Radar, and Audio. Arun, his fellow labmates, and his co-advisors celebrated with an outdoor dinner and a delicious cake creation from PULSE Lab member Kelley Kempski. Arun’s post-graduate plans are to work for Amazon, Inc. in the Bay area.

30 Invited Talks by Prof. Bell in 2020-2021

Prof. Bell delivered a total of 17 invited talks to date in 2021 (compared to 13 in 2020 and over 70 talks total). Here is a summary of the 2020-2021 talk titles, dates, and locations, with additional highlights, announcements, and links to recordings wherever available:

2021

  1. Distinguished Keynote: 19th Annual Imaging Network Ontario (ImNO) Symposium, Listening to the Sound of Light to Guide Surgeries, Toronto, ON, March 22-23, 2021 [delivered via Zoom to ~180 participants]
  2. Plenary: IEEE EMBS Grand Challenge on Data Science: Medical Imaging, Ultrasound Image Formation in the Deep Learning Age, February 10, 2021 [delivered via Zoom webinar to ~230 participants]
  3. Invited: University of North Carolina at Chapel Hill, Computational Medicine Seminar Series, Listening to the Sound of Light to Guide Surgeries, Chapel Hill, NC, May 20, 2021 [virtual delivery]
  4. Invited: SPIE Women in Optics Spotlight Series, Representation Matters: Role Models and Allies, May 12, 2021 [virtual delivery, recording available for SPIE members]
    • Promotional Advertisement:
  5. Invited: University of Virginia, Biomedical Engineering Seminar Series, Listening to the Sound of Light to Guide Surgeries, Charlottesville, VA, April 30, 2021 [virtual delivery via Zoom to ~50 attendees]
  6. Invited: Marquette University and Medical College of Wisconsin, Joint Department of Biomedical Engineering Seminar Series, Listening to the Sound of Light to Guide Surgeries, Milwaukee, WI, April 23, 2021 [virtual delivery]
  7. Invited: OSA Therapeutic Laser Applications Technical Group Special Event at the OSA Biophotonics Congress: Optics in the Life Sciences, Listening to the Sound of Light to Guide Surgeries, April 14, 2021 [virtual delivery]
  8. Invited: AIUM Machine Learning in Application to Ultrasound Beamforming Session, Deep Learning Architectures and Applications for Ultrasound Image Formation, New York, NY, April 10-14, 2021 [virtual delivery]
  9. Invited: University of Colorado at Boulder, Applied Mathematics Colloquium, Ultrasound Image Formation in the Deep Learning Age, April 2, 2021 [virtual delivery, recording available on YouTube]
  10. Invited: Medtronic, Inc., Photoacoustic Vision for Surgical Guidance, San Francisco, CA, March 19, 2021 [virtual delivery]
  11. Massachusetts Institute of Technology, EECS Seminar Series, Listening to the Sound of Light to Guide Surgeries, Cambridge, MA, March 15, 2021 [virtual delivery]
  12. Invited: SPIE Photonics West, Photoacoustic Vision for Surgical Guidance, San Francisco, CA, March 6-11, 2021 [virtual delivery]
  13. Invited: University of Toledo, Listening to the Sound of Light to Guide Surgeries, Bioengineering Seminar Series, Toledo, OH, March 5, 2021 [virtual delivery]
  14. Invited: University of Pennsylvania, Photoacoustic Vision for Surgical Robotics, GRASP On Robotics Seminar Series, Philadelphia, PA, February 26, 2021 [delivered via Zoom, recording available on YouTube]
  15. Invited: University of Washington, Bioengineering Seminar Series, Listening to the Sound of Light to Guide Surgeries, Seattle, WA, February 11, 2021 [delivered via Zoom]
  16. Invited: Photonics Spectra Conference, Listening to the Sound of Light to Guide Surgeries, January 19-22, 2021
  17. Invited by AIUM’s Artificial Intelligence Summit Task Force: American Institute of Ultrasound in Medicine (AIUM) Artificial Intelligence (AI) in Medical Ultrasound Imaging Summit, AI enabled US Signal Processing, January 13 & 20, 2021 [virtual delivery via Zoom to ~90 attendees]

2020

  1. Keynote: NeurIPS Black in AI Workshop, Ultrasound Image Formation in the Deep Learning Age, December 7, 2020 [virtual delivery via live stream with Zoom Q&A, recording available]
  2. Keynote: King’s College London (KCL) Biomedical Engineering and Imaging Sciences (BMEIS) Postgraduate Research (PGR) Symposium, Photoacoustic Imaging for Surgical and Interventional Guidance, July 20, 2020 [virtual delivery via MS Teams to approximately 175 participants]
  3. Plenary: SPIE Photonics West, BiOS Hot Topics Plenary Event, Photoacoustic Imaging Assistants for Minimally Invasive Surgeries & Procedures, San Francisco, CA, February 1, 2020 [Inaugural Journal of Biomedical Optics (JBO) Speaker, selected for being the senior author of the most impactful paper published in JBO in 2019, recording available, livestream recording also available with over 1.2k views]
  4. Invited: 179th Meeting of the Acoustical Society of America, Special Technical Session, “Death to Delay and Sum: Advanced Beamforming” Deep Learning the Sound of Light to Guide Surgeries, December 8-12, 2020 [virtual delivery via Zoom to ~45 attendees]
  5. Invited: University of California Irvine, Beckman Laser Institute & Medical Clinic Seminar Series, Listening to the Sound of Light to Guide Surgeries, Irvine, CA November 19, 2020 [delivered via Zoom to ~30 attendees, recording available on YouTube]
  6. Invited: University of Rochester, ECE Seminar Series, Listening to the Sound of Light to Guide Surgeries, Rochester, NY, November 11, 2020 [delivered via Zoom to ~30 attendees]
  7. Invited: University of Texas Austin, Biomedical Engineering Seminar Series, Listening to the Sound of Light to Guide Surgeries, Austin, TX, October 29, 2020 [delivered via Zoom to ~35 attendees]
  8. Invited: University of California Davis, Electrical and Computer Engineering Seminar Series, Listening to the Sound of Light to Guide Surgeries, Davis, CA, October 9, 2020 [delivered via Zoom to 170+ attendees]
  9. Invited: OSA Frontiers 2020 (FiO), Listening to the Sound of Light to Guide Surgeries, Washington, D.C., September 13-14, 2020 [delivered via Zoom to 20+ attendees]
  10. Invited: IEEE International Ultrasonics Symposium, Photoacoustic Vision for Surgical Guidance, September 9, 2020 [delivered via Zoom to 80+ attendees]
  11. Invited: SPIE Journal of Biomedical Optics Hot Topics Webinar Series, Photoacoustic Imaging for Surgical and Interventional Guidance, one of three co-presenters in series entitled Photoacoustic Imaging: The Next Generation, August 17, 2020 [delivered via Demio to 200+ attendees, recording available]
  12. Invited: Duke University Ultrasound Seminar Series, Photoacoustic Spatial Coherence Theory, June 26, 2020 [delivered via Zoom with 40+ attendees]
  13. Invited: Ryerson University Physics Colloquium, Listening to the Sound of Light to Guide Surgeries, Toronto, CA, March 2, 2020 [Last in-person talk before COVID-19 travel restrictions were imposed]

CANCELLED or POSTPONED DUE TO COVID-19

  1. Invited: 179th Meeting of the Acoustical Society of America, Special Technical Session, “Death to Delay and Sum: Advanced Beamforming” Deep Learning the Sound of Light to Guide Surgeries, Chicago, IL, May 11-15, 2020 (postponed to December 8-12, 2020 due to COVID-19)
  2. Invited: University of Rochester, Distinguished Lecture Series, Rochester, NY, April 15, 2020 (postponed due to COVID-19)
  3. Invited: Columbia University, ECE Seminar Series, New York, NY, March 24, 2020 (postponed due to COVID-19)
  4. Invited: AIUM Machine Learning in Application to Ultrasound Beamforming Session, Deep Learning Architectures and Applications for Ultrasound Image Formation, New York, NY, March 21-25, 2020 (canceled due to COVID-19)

Michelle Completed the ECE Department Preliminary Research Proposal Seminar

Congratulations to Michelle Graham on her successful completion of the ECE Department preliminary thesis research proposal and seminar requirement!

Details about Michelle’s proposal seminar are available here: https://engineering.jhu.edu/ece/events/thesis-proposal-michelle-graham/?instance_id=1075#.YLSFAS33ZOk.

The topics discussed in Michelle’s seminar are summarized in the following publications:

Journal Articles

  1. Graham MT, Bell MAL, Photoacoustic Spatial Coherence Theory and Applications to Coherence-Based Image Contrast and Resolution, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 67(10):2069-2084, 2020 [pdf]
  2. Graham MT, Huang J, Creighton F, Bell MAL, Simulations and human cadaver head studies to identify optimal acoustic receiver locations for minimally invasive photoacoustic-guided neurosurgery, Photoacoustics, 19:100183, 2020 [pdf]

Conference Proceedings

  1. Graham M, Creighton F, Bell MAL, Validation of eyelids as acoustic receiver locations for photoacoustic-guided neurosurgery, Proceedings of SPIE Photonics West, San Francisco, CA, March 6-11, 2021 [pdf]
  2. Graham M, Creighton F, Bell MAL, Investigation of acoustic windows for photoacoustic imaging of intracranial blood vessels, Proceedings of the 2020 IEEE International Ultrasonics Symposium, Virtual, September 6-11, 2020 [pdf]
  3. Graham M, Guo J, Bell MAL, Simultaneous visualization of nerves and blood vessels with multispectral photoacoustic imaging for intraoperative guidance of neurosurgeries, Proceedings of SPIE Photonics West, San Francisco, CA, February 2-7, 2019 [pdf]
  4. Graham M, Bell MAL, Development and validation of a short-lag spatial coherence theory for photoacoustic imaging, Proceedings of SPIE Photonics West, San Francisco, CA, January 28-31, 2018 [pdf]
  5. M Graham, MAL Bell, Theoretical Application of Short-Lag Spatial Coherence to Photoacoustic Imaging, Proceedings of the 2017 IEEE International Ultrasonics Symposium, Washington, DC, September 6-9, 2017 [pdf]

Alycen Completed the ECE Department Preliminary Research Proposal Seminar

Congratulations to Alycen Wiacek on her successful completion of the ECE Department preliminary thesis research proposal and seminar requirement!

Details about Alycen’s proposal seminar are available here: https://engineering.jhu.edu/ece/events/thesis-proposal-alycen-wiacek/?instance_id=1066#.YGna5khKi8o.

The topics discussed in Alycen’s seminar are summarized in the following publications:

Journal Articles

  1. Wiacek A, Oluyemi E, Myers K, Mullen L, Bell MAL, Coherence-based beamforming increases the diagnostic certainty of distinguishing fluid from solid masses in breast ultrasound exams, Ultrasound in Medicine and Biology, 46(6):1380-1394, 2020 [pdf]
  2. Wiacek A, González E, Bell MAL, CohereNet: A Deep Learning Architecture for Ultrasound Spatial Correlation Estimation and Coherence-Based Beamforming, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 67(12):2574-2583, 2020 [featured on journal cover] [pdf]
  3. Wiacek A, Rindal OMH, Falomo E, Myers K, Fabrega-Foster K, Harvey S, Bell MAL, Robust Short-Lag Spatial Coherence Imaging of Breast Ultrasound Data: Initial Clinical Results, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, 66(3):527-540, 2019 [pdf]

Conference Proceedings

  1. Wiacek A, Oluyemi E, Myers K, Mullen L, Bell MAL, Coherence-based beamforming improves the diagnostic certainty of breast ultrasound exams, Proceedings of the 2020 IEEE International Ultrasonics Symposium, Virtual, September 6-11, 2020 [pdf]
  2. Wiacek A, González E, Dehak N, Bell MAL, CohereNet: A deep learning approach to coherence-based beamforming, Proceedings of the 2019 IEEE International Ultrasonics Symposium, Glasgow, Scotland, October 6-9, 2019 [pdf]
  3. Wiacek A, Myers K, Falomo E, Rindal OMH, Fabrega-Foster K, Harvey S, Bell MAL, Clinical feasibility of coherence-based beamforming to distinguish solid from fluid hypoechoic breast masses, Proceedings of the 2018 IEEE International Ultrasonics Symposium, Kobe, Japan, October 22-25, 2018 [pdf]

Reese Dunne Wins Goldwater Scholarship

Congratulations to Reese Dunne, our 2020 summer REU student, who was recently selected to receive the 2021 Barry S. Goldwater Scholarship! The Goldwater Scholarship Program is one of the oldest and most prestigious national scholarships in the natural sciences, engineering, and mathematics in the United States. This program seeks to identify and support college sophomores and juniors who show exceptional promise of becoming the nation’s next generation of research leaders.

After completing summer research in the PULSE Lab through our NSF-Funded CSMR REU Program, Reese returned to complete his undergraduate studies at Mississippi State University. Reese is now his university’s only Goldwater Scholar in 2021 and his university’s 6th winner since 2012. Reese’s additional successes since departing from our program and winning the program’s 2nd Best Presentation Award include winning the 2nd place award in the Biological Sciences and Engineering category at his school’s Fall 2020 Undergraduate Research Symposium and winning the Best Oral Presentation award in the STEM category at his state-wide Mississippi Honors Undergraduate Conference. Reese presented his summer research with us to secure these outstanding wins.

JHU Hub Story

Mississippi State University News (re: Goldwater)

Mississippi State University News (re: Undergraduate Research Symposium)

Peer-Reviewed Paper Accepted to ICRA

Congratulations to Mardava Gubbi! His paper, Deep Learning-Based Photoacoustic Visual Servoing: Using Outputs from Raw Sensor Data as Inputs to a Robot Controller, was accepted for presentation at the IEEE International Conference on Robotics and Automation (ICRA),  Xi’an, China, May 30 – June 5, 2021. This peer-reviewed paper was also accepted for inclusion in the conference proceedings.

ICRA is the IEEE Robotics and Automation Society’s flagship conference and the premier international forum for robotics researchers to present and discuss their work.

Congrats again on this significant achievement, recognition, and milestone, Mardava!

Early Career Achievement Award Celebration, Invited Talk, and Five PULSE Lab Abstracts Accepted to SPIE Photonics West 2021

Five PULSE Lab abstracts were accepted to SPIE Photonics West. This conference is taking place virtually, March 6-11, 2021.

  1. Graham M, Creighton F, Bell MAL, Validation of eyelids as acoustic receiver locations for photoacoustic-guided neurosurgery, Proceedings of SPIE Photonics West, San Francisco, CA, March 6-11, 2021
  2. Wiacek A, Wang KC, Wu H, Bell MAL, Parking sensor-inspired approach to photoacoustic-guided hysterectomy demonstrated with human cadavers, Proceedings of SPIE Photonics West, San Francisco, CA, March 6-11, 2021
  3. Kempski KM, Graham MT, Wiacek A, Gubbi MR, Bell MAL, Generalized contrast-to-noise ratio as a metric of photoacoustic image quality, Proceedings of SPIE Photonics West, San Francisco, CA, March 6-11, 2021

This work spans two tracks within the SPIE Photonics West BiOS Conference:

In addition to these five PULSE Lab contributions:

  1. Prof. Bell was invited to present on the topic Photoacoustic vision for surgical guidance.
  2. Pof. Bell’s Early Career Achievement Award was celebrated in a live presentation by 2021 SPIE President David Andrews. The recording of this presentation will be available soon.

Prof. Bell Wins SPIE Early Career Achievement Award

Congratulations to Prof. Bell, who was selected to receive the 2021 SPIE Early Career Achievement Award. This award recognizes excellence in academia, particularly with regard to significant and innovative technical contributions in the engineering or scientific fields of relevance to SPIE. The SPIE Awards Committee made this recommendation in recognition of Prof. Bell’s pioneering contributions to photoacoustic imaging for surgical guidance, including innovative technology designs, novel deep learning applications, informative spatial coherence beamforming theory, and visionary clinical possibilities.

Award Details

SPIE Announcement

ECE Announcement

HEMI Announcement

Malone Center Announcement

Journal Paper Accepted to IEEE T-BME

Congratulations to Eduardo González! His first-author journal paper entitled Combined ultrasound and photoacoustic image guidance of spinal pedicle cannulation demonstrated with intact ex vivo specimens was accepted to the journal IEEE Transactions on Biomedical Engineering.

This paper presents the first known combined ultrasound and photoacoustic image guidance system with software capabilities that are optimized for pedicle cannulation in posterior spinal fusion surgery. We demonstrate that both amplitude- and coherence-based beamforming methods are mutually beneficial for this task. Specifically, coherence-based beamforming of ultrasound images improved the visualization of bone for ultrasound-to-CT registration, while coherence-based beamforming of photoacoustic images improved target localization, which is important for tracking tool tips during pedicle hole creation. As shown in the figure, amplitude-based photoacoustic beamforming differentiated signals associated with an optical fiber place inside a pedicle hole (which is ideal for screw placement) from signals associated with an optical fiber touching cortical bone (which is characteristic of an impending bone breach that needs to be avoided). This proposed combination of imaging modalities and beamforming methods is promising to assist surgeons with identifying and avoiding accidental bone breaches during spinal fusion surgeries.

These new findings nicely complement our previous findings demonstrating that photoacoustic-based differentiation is possible prior to the creation of any holes, which is advantageous for correctly determining an appropriate starting point for hole creation. Together, these findings represent a complete system that can be used prior to and during pedicle hole creation for spinal fusion surgeries.

Citation: González E, Jain A, Bell MAL, Combined ultrasound and photoacoustic image guidance of spinal pedicle cannulation demonstrated with intact ex vivo specimens, IEEE Transactions on Biomedical Engineering (accepted December 17, 2020) [pdf]

Prof. Bell Wins NSF Smart & Connected Health Award

Prof. Bell was awarded $1M from the NSF to advance cardiac procedures with the broader goal of replacing fluoroscopy one day. The objective of this award is to apply theoretical spatial coherence models and experimental optical analyses to understand the limits of a novel, integrated robotic-photoacoustic imaging system for guiding cardiac surgeries and interventions. This work will be completed in collaboration with Jonathan Chrispin, MD at Johns Hopkins Medicine.

More details on the basic principles of the proposed approach are available in our initial journal publication on this topic:

  • Graham M, Assis F, Allman D, Wiacek A, González E, Gubbi M, Dong J, Hou H, Beck S, Chrispin J, Bell MAL, In vivo demonstration of photoacoustic image guidance and robotic visual servoing for cardiac catheter-based interventions, IEEE Transactions on Medical Imaging, 39(4):1015-1029, 2020 [pdf]

This work has also been featured in the following articles and press releases:

We additionally have a pending patent for these ideas.

NSF Award Announcement

ECE Department Announcement

Alycen and Kelley Receive MICCAI Student Participation Award


Alycen Wiacek and Kelley Kemspki were selected to receive the MICCAI Student Participation Award! The MICCAI Society provided 50 of these awards non-author student member registrations to support online participation from diverse members of the global scientific community, considering the virtual nature of the MICCAI 2020 conference this year. The award selection committee included representation from the MICCAI Student Board, the MICCAI Society Diversity Working Group, Women in MICCAI, and the MICCAI 2020 Conference Organization. This selection committee was chaired by the MICCAI awards coordinator. Congrats to Alycen and Kelley on their selection!

Invited Perspective Published in Journal of Applied Physics

Prof. Bell shares her thoughts on Photoacoustic imaging for surgical guidance: Principles, applications, and outlook in an invited Perspective that was recently published in the Journal of Applied Physics. According to the journal’s website: Perspective articles are written to present an expert viewpoint on topics currently generating a lot of interest in the research community. While perspectives generally provide a brief overview of the topic, their main purpose is to provide a forward looking view on where progress in a particular research area is heading. 

Citation: Bell MAL, Photoacoustic imaging for surgical guidance: Principles, applications, and outlook, Journal of Applied Physics, 128(6):060904, 2020 [pdf]

Journal Paper Published in Biomedical Optics Express

Congratulations to Kelley Kempski! Her first-author journal paper entitled Application of the generalized contrast-to-noise ratio to assess photoacoustic image quality was published in Biomedical Optics Express.

This paper investigates a newly developed, probability-based, generalized contrast-to-noise (gCNR) when applied to photoacoustic images. More traditional metrics experience large variations when a target is fully detectable with additional increases bearing no impact on photoacoustic target detectability. In addition, gCNR is robust to changes in traditional metrics introduced by applying a minimum threshold to image amplitudes. Therefore, gCNR has promising potential to provide additional insight, particularly when designing new beamformers and image formation techniques and when reporting quantitative performance without an opportunity to qualitatively assess corresponding images (e.g., in text-only abstracts). We recommend gCNR as a new standard for assessment of novel photoacoustic beamforming and image formation techniques.

Citation: Kempski KM, Graham MT, Gubbi MR, Palmer T, Bell MAL, Application of the generalized contrast-to-noise ratio to assess photoacoustic image quality, Biomedical Optics Express, 11(7), 3684-3698, 2020 [pdf]

Paper Published in Journal of Biomedical Optics

Congratulations to Eduardo González! His first-author journal paper entitled GPU implementation of photoacoustic short-lag spatial coherence imaging for improved image-guided interventions was accepted to Journal of Biomedical Optics.

This paper introduces the first known real-time implementation of short-lag spatial coherence (SLSC) beamforming for photoacoustic imaging and applies this real-time algorithm to improve signal segmentation during photoacoustic-based visual servoing with low-energy lasers. Results are promising for the use of low-energy, miniaturized lasers to perform GPU-SLSC photoacoustic-based visual servoing in the operating room with laser pulse repetition frequencies as high as 41.2 Hz.

Citation: González E, Bell MAL, GPU implementation of photoacoustic short-lag spatial coherence imaging for improved image-guided interventions, Journal of BiomedicalOptics, 25(7):077002, 2020 [pdf]

Eight Abstracts Accepted to IEEE IUS 2020 and Invited Talk by Prof. Bell

The following PULSE Lab abstracts were accepted for presentation during the 2020 IEEE International Ultrasonics Symposium (IUS) to be held on September 6-11, 2020 online (due to COVID-19).

  1. Theory-Based Predictions of Generalized Contrast-to-Noise Ratios for Photoacoustic Images to be presented by Mardava Gubbi in the session entitled Technical Advances in Photoacoustic Imaging on Tuesday, September 8, 11:30 – 1:30 PM (PDT), 2:30 – 4:30 PM (EDT)
  2. Multi-task learning for ultrasound image formation and segmentation directly from raw in vivo data to be presented by Kelley Kempski in the session entitled Segmentation & Registration on Wednesday, September 9, 4:15 – 6:15 AM (PDT), 7:15 – 9:15 AM (EDT)
  3. Dual-Wavelength Photoacoustic-Guided Hysterectomy Demonstration with a Human Cadaver to be presented by Alycen Wiacek in the session entitled Photoacoustic Ultrasound Frequency Analysis & Image Guided Interventions on Wednesday, September 9, 4:15 – 6:15 AM (PDT), 7:15 – 9:15 AM (EDT)
  4. Experimental Cadaver Investigation of Ocular Receiver Location for Photoacoustic Imaging of Intracranial Blood Vessels  to be presented by Michelle Graham in the session entitled Photoacoustic Ultrasound Frequency Analysis & Image Guided Interventions on Wednesday, September 9, 4:15 – 6:15 AM (PDT), 7:15 – 9:15 AM (EDT)
  5. Acoustic Frequency-Based Multispectral Differentiation of Photoacoustic Signals from Surgical Biomarkers to be presented by Eduardo González in the session entitled Photoacoustic Ultrasound Frequency Analysis & Image Guided Interventions on Wednesday, September 9, 4:15 – 6:15 AM (PDT), 7:15 – 9:15 AM (EDT)
  6. Coherence-Based Beamforming Improves the Diagnostic Certainty of Breast Ultrasound Exams to be presented by Alycen Wiacek in the session entitled Machine Learning Approaches & Applications on Thursday, September 10, 7:45 AM (PDT), 10:45 AM (EDT)

Congrats to Alycen, Eduardo, Michelle, Kelley, and Mardava!

Prof. Bell also collaborated with colleagues on the following work that will be presented at IEEE IUS 2020:

  • Enhancing the Detectability of Highly Coherent Targets in Short-Lag Spatial Coherence Images with Multi-Line Transmission by Giulia Matrone[3}, Muyinatu Lediju Bell{1}, Alessandro Ramalli{2}
    {1}Johns Hopkins University, United States; {2}University of Florence, Italy; {3}University of Pavia, Italy to be presented in the session entitled Enhancing Images Through Novel Beamforming II on Thursday, September 10, 4:15 – 6:15 AM (PDT), 7:15 – 9:15 AM (EDT)
  • Challenge on Ultrasound Beamforming with Deep Learning (CUBDL) by Muyinatu Bell{2}, Jiaqi Huang{2}, Dongwoon Hyun{3}, Yonina Eldar{4}, Ruud van Sloun{1}, Massimo Mischi{1}
    {1}Eindhoven University of Technology, Netherlands; {2}Johns Hopkins University, United States; {3}Stanford University, United States; {4}Weizmann Institute of Science, Israel to be presented in the session entitled Deep Learning in Beamforming on Thursday, September 10, 4:15 – 6:15 AM (PDT), 7:15 – 9:15 AM (EDT)
  • CUBDL Live Session (winner announcement) on Friday, September 11, 9:45 – 10:15 AM (PDT), 12:45 – 1:15 PM (EDT)

In addition to the above presentations, Prof. Bell will give an invited lecture on the topic:

  • Photoacoustic Vision for Surgical Guidance in the Advanced Imaging Technologies and Techniques Special Session on Wednesday, September 9, 6:30 – 8:00 AM (PDT), 9:30 AM – noon (EDT) [full list of invited speakers]

Symposium website: https://2020.ieee-ius.org

Journal Paper Accepted to Photoacoustics

Congratulations to Michelle Graham! Her first-author journal paper entitled Simulations and human cadaver head studies to identify optimal acoustic receiver locations for minimally invasive photoacoustic-guided neurosurgery was accepted to the journal Photoacoustics.

This paper presents simulation and experimental studies performed with both an intact human skull (which was cleaned from tissue attachments) and a complete human cadaver head (with contents and surrounding tissue intact) to investigate optimal locations for ultrasound probe placement during photoacoustic-guided surgeries of the skull base. The combined simulation and experimental results newly introduce the eye as a suitable acoustic window for surgical guidance. We also demonstrate a light delivery design that is suitable for patient use. Results are generally promising toward identifying, quantifying, and overcoming major system design barriers for progression to future patient testing.

Citation: Graham MT, Huang J, Creighton FX, Bell MAL, Simulations and human cadaver head studies to identify optimal acoustic receiver locations for minimally invasive photoacoustic-guided neurosurgery, Photoacoustics, 19:100183, 2020 [pdf]

Journal Paper Accepted to IEEE T-UFFC

Congratulations to Michelle Graham! Her first-author journal paper entitled Photoacoustic Spatial Coherence Theory and Applications to Coherence-Based Image Contrast and Resolution was accepted to the journal IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control.

This paper presents the first known theoretical derivation for photoacoustic spatial coherence functions, demonstrating excellent agreement with experimental results, particularly in the short spatial lag region, which is represented as a percentage of the receive aperture (click on the .gif to see for yourself). The coherence functions theory can be described by relating the van Cittert Zernike theorem to photoacoustics. We achieved the associated incoherent source requirement by modeling a photoacoustic target as a collection of spatially incoherent absorbers. This theory was then used to hypothesize and test previously unexplored principles for optimizing photoacoustic short-lag spatial coherence (SLSC) images, including the influence of the incident light profile on photoacoustic spatial coherence functions and associated SLSC image contrast and resolution.

Citation: Graham MT, Bell MAL, Photoacoustic Spatial Coherence Theory and Applications to Coherence-Based Image Contrast and Resolution, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control (accepted May 26, 2020) [pdf]

PULSE Lab REU Student Wins 2nd Place Presentation Award

Congrats to Reese Dunne! He was our summer Research Experience for Undergraduates (REU) student who conducted the first ever virtual summer research project with us. His research topic was centered on a comparison of compressional and elastic wave simulations for presurgical planning of photoacoustic guided neurosurgery, building on recently published paper from the PULSE Lab. His outstanding work earned him a second place presentation award at the 2020 Computational Sensing and Medical Robotics (CSMR) REU Final Presentations Award Ceremony. He joins a long list of PULSE Lab REU students to win this award.

Special thanks to Reese’s graduate student mentor, Michelle Graham.

Prof. Bell Presents Keynote Lecture at King’s College London

Prof. Bell was invited to give a keynote presentation at the annual King’s College London School of Biomedical Engineering and Imaging Sciences (BMEIS) Postgraduate Research (PGR) Symposium. Her presentation was delivered via Microsoft Teams on the topic “Photoacoustic Imaging for Surgical and Interventional Guidance,” which included a discussion of her career path. After this presentation, she received a thoughtful appreciation award for her participation:

King’s College London News

Journal Paper Accepted to IEEE T-UFFC

Congratulations to Arun Nair! His first-author journal paper entitled Deep learning to obtain simultaneous ultrasound image and segmentation outputs from a single input of raw channel data was accepted to IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. The paper will appear in the journal’s special issue on Deep Learning in Medical Ultrasound – from image formation to image analysis.

This paper explores the use of deep neural network (DNNs) as alternatives to delay-and-sum beamforming. The DNNs learned information directly from raw channel data to simultaneously generate both a segmentation map for automated ultrasound tasks and a corresponding ultrasound B-mode image for interpretable supervision of the automation. Although the focus was visualization and segmentation of anechoic targets surrounded by tissue, the concept can be adapted to any specific task of interest. Overall, the DNNs successfully translated feature representations learned from simulated data to phantom and in vivo data, which is promising for this novel approach to simultaneous ultrasound image formation and segmentation.

Citation: Nair AA, Washington K, Tran T, Reiter A, Bell MAL, Deep learning to obtain simultaneous ultrasound image and segmentation outputs from a single input of raw channel data, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control (accepted May 6, 2020) [pdf]

Journal Paper Accepted to IEEE T-UFFC

Congratulations to Alycen Wiacek! Her first-author journal paper entitled CohereNet: A Deep Learning Architecture for Ultrasound Spatial Correlation Estimation and Coherence-Based Beamforming was accepted to IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. The paper will appear in the journal’s special issue on Deep Learning in Medical Ultrasound – from image formation to image analysis.

This paper presents details of a novel deep neural network (DNN) architecture, named CohereNet, that was trained to estimate spatial correlation functions. The DNN-estimated correlation functions were then used to create short-lag spatial coherence ultrasound images at a faster rate than a CPU approach and with more accuracy than a GPU approach. Results were generalizable across multiple phantoms, in vivo datasets, ultrasound transducers, and ultrasound system manufacturers not included during training. CohereNet has additional potential benefits in low-power DNN-based FPGA implementations of coherence-based beamforming for miniaturized ultrasound imaging systems. In addition, CohereNet has potential utility in other areas of ultrasound imaging that require fundamental cross-correlation calculations, including elastography, speckle tracking, sound speed correction, and other advanced beamforming algorithms, such as minimum variance beamforming.

Citation: A. Wiacek, E. González and M. A. L. Bell, “CohereNet: A Deep Learning Architecture for Ultrasound Spatial Correlation Estimation and Coherence-Based Beamforming,” IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, accepted March 20, 2020 [pdf]

Journal Paper Accepted to Ultrasound in Medicine & Biology

Congratulations to Alycen Wiacek! Her first-author journal paper entitled Coherence-based beamforming increases the diagnostic certainty of distinguishing fluid from solid masses in breast ultrasound exams was accepted to Ultrasound in Medicine & Biology. A major highlight of this paper is the inclusion of a task-based user study to determine the ability of coherence-based beamforming, specifically robust short-lag spatial coherence (R-SLSC) imaging, to assess breast mass content and ultimately impact clinical care.

The information from R-SLSC images reduced the uncertainty of fluid mass content from 47.5% to 15.8%, and the number of fluid-filled masses recommended for biopsy was reduced from 43.3% to 13.3%. This work is the first to investigate coherence-based beamforming in breast ultrasound to inform clinical decision making, highlighting the potential of this novel technique to improve diagnostic certainty and to reduce the number of unnecessary biopsies of of fluid-filled breast masses.

Citation: A Wiacek, E Oluyemi, K Myers, L Mulen, MAL Bell, Coherence-based beamforming increases the diagnostic certainty of distinguishing fluid from solid masses in breast ultrasound exams, Ultrasound in Medicine and Biology, accepted January 20, 2020 [pdf]

SPIE Photonics West Recap

The PULSE Lab recently returned from SPIE Photonics West 2020, after enjoying multiple opportunities for exposure throughout various aspects of this grand annual event with 23,000+ attendees. First, Professor Bell was invited to give a Hot Topics presentation during the conference Plenary session. She was selected as the inaugural Journal of Biomedical Optics speaker for having the most impactful paper in 2019.

Three PULSE Lab students additionally presented aspects of their work on this hot topic.

Michelle Graham presented “Photoacoustic image guidance and robotic visual servoing to mitigate fluoroscopy during cardiac catheter interventions”

Alycen Wiacek presented “Dual-wavelength photoacoustic imaging for guidance of hysterectomy procedures”

Eduardo Gonzalez presented “A GPU approach to real-time coherence-based photoacoustic imaging and its application to photoacoustic visual servoing”

In addition to these four technical presentations, PULSE Lab members who were involved in the first known in vivo demonstration of photoacoustic image guidance for abdominal surgeries were featured in the Show Daily Weekend Edition (see pg. 3).

SPIE Event Highlights

Optics Show Daily

ECE Department Announcement

LaserFocusWorld Announcement (see first paragraph & “Hot Topics and Other Plenaries” section)

SPIE Newsroom

Prof. Bell Wins Inaugural IEEE UFFC Star Ambassador Lectureship Award

Congratulations to Prof. Bell for being selected to receive the inaugural IEEE UFFC Star Ambassador Lectureship Award! This award from the IEEE Ultrasonics Ferroelectrics and Frequency Control Society is intended to support early career professionals with the delivery of technical talks highlighting their research.  Up to $2,500 of support is provided to create new contacts and promote new collaborations with colleagues and students at academic institutions, national laboratories and local industry.

HEMI Announcement

Hot Topics Plenary Talk by Prof. Bell & Three PULSE Lab Abstracts Accepted to SPIE Photonics West 2020

Three PULSE Lab abstracts were accepted to SPIE Photonics West. This conference will take place February 1-6, 2019 at the The Moscone Center in San Francisco, California.

  1. A GPU approach to real-time coherence-based photoacoustic imaging and its application to photoacoustic visual servoing
    Eduardo Gonzalez, Mardava Gubbi, Muyinatu Bell
    4 February 2020 • 6:00 – 8:00 PM
  2. Dual-wavelength photoacoustic approach to guide hysterectomies
    Alycen Wiacek, Karen C. Wang, Muyinatu Bell
    4 February 2020 • 11:40 AM – 12:00 PM
  3. Photoacoustic image guidance and robotic visual servoing to mitigate fluoroscopy during cardiac catheter interventions
    Michelle Graham, Fabrizio Assis, Derek Allman, Alycen Wiacek, Eduardo Gonzalez, Mardava Gubbi, Huayu Hou, Jinxin Dong, Sarah Beck, Jonathan Chrispin, Muyinatu Bell
    4 February 2020 • 12:00 – 12:20 PM

This work spans two tracks within the SPIE Photonics West BiOS Conference:

In addition to these three PULSE Lab contributions, Prof. Bell was invited to present her research during the BiOS Hot Topics Plenary Event on Saturday, February 1, 2020.

8:15 PM – 8:25 PM
Photoacoustic Imaging Assistants for Minimally Invasive Surgeries and Procedures

LaserFocusWorld Announcement (see first paragraph & “Hot Topics and Other Plenaries” section)

ECE Department Announcement

Show Daily Weekend Edition

Prof. Bell Elevated to Senior Member of IEEE

IEEE is the world’s largest technical professional society and serves professionals involved in all aspects of the electrical, electronic, and computing fields and related areas of science and technology. Congratulations to Prof. Muyinatu Bell, who was elevated to the grade of IEEE Senior Member this year, an honor that is only bestowed on those who have made significant contributions to the profession. 

IEEE Senior Members are eligible to hold executive IEEE volunteer positions, can serve as a reference for other applicants for Senior Membership, and are invited to participate on the panel to review Senior Member applications.

The full IEEE criteria for elevating members to the Senior Member grade includes ten years of professional experience, five years of significant performance, and three references from current IEEE members holding Senior Member, Fellow, or Honorary Member grades. 

 

ECE Department Announcement

IEEE RAS Newsletter Announcement

REU Abstract Accepted to BMES

Congratulations to Kendra Washington, our summer Research Experience for Undergraduates (REU) student and Leadership Alliance Scholar from Georgia Institute of Technology. Her first-author abstract to the Biomedical Engineering Society (BMES) meeting was accepted as as part of the Undergraduate Research & Design track. She will present in the Biomedical Imaging and Instrumentation session.

Title:
Effect of Raw Ultrasound Data Downsampling on Small Cyst Segmentation with Deep Neural Networks
Authors:
Kendra Washington, Arun Nair, Muyinatu A. Lediju Bell

https://www.bmes.org/program_agenda

Eduardo González Receives Student Travel Award to IEEE IUS 2019

PULSE Lab grad student Eduardo González was selected by the IEEE International Ultrasonics Symposium Organization Committee to receive a Student Travel Award to attend the 2019 IEEE International Ultrasonics Symposium taking place October 6-9, 2019 at the Scottish Event Campus in Glasgow, Scotland. Eduardo will give an oral presentation on his work entitled GPU implementation of coherence-based photoacoustic beamforming for autonomous visual servoing of a needle tip. Congratulations Eduardo!

Paper Accepted to Journal of Biomedical Optics

Congratulations to Kelley Kempski! Her first author paper entitled, In vivo photoacoustic imaging of major blood vessels in the pancreas and liver during surgery, was accepted to the Journal of Biomedical Optics. This work is the first to demonstrate in vivo blood vessel visualization with possible applications to a range of photoacoustic-guided pancreatic and liver surgeries.

Special thanks to Alycen Wiacek, who mentored Kelley on this project in her role as Kelley’s graduate student mentor through the Research Experience for Undergraduates (REU) Computational Sensing and Medical Robotics (CSMR) summer program. This program was recently renewed with 3 more years of funding support from the National Science Foundation.

Citation: Kempski K, Wiacek A, Graham M, González E, Goodson B, Allman D, Palmer J, Hou H, Beck S, He J, Bell MAL, In vivo photoacoustic imaging of major blood vessels in the pancreas and liver during surgery, Journal of Biomedical Optics, 24(12):121905, 2019 [pdf]

Related News:

Kelley Kempski Wins Best Presentation Award

SPIE Photonics West 2019 Recap

Kelley Kempski Wins NSF GRFP Fellowship

The Research Experience for Undergraduates in Computational Sensing and Medical Robotics program receives a three-year grant from NSF

Four Abstracts Accepted to IEEE IUS 2019

Four PULSE Lab abstracts were accepted for presentation during the 2019 IEEE International Ultrasonics Symposium (IUS) to be held on October 6-9, 2019, at the Scottish Event Campus in Glasgow, Scotland.

  1. CohereNet: A deep learning approach to coherence-based beamforming to be presented by Alycen Wiacek in the session entitled Deep Learning Beamformers on Monday, October 7, 4:00-4:15pm
  2. GPU implementation of coherence-based photoacoustic beamforming for autonomous visual servoing of a needle tip to be presented by Eduardo Gonzalez in the session entitled Hardware Acceleration on Monday October 7, 11:00-11:15am
  3. Simulation and experimental assessment of optimal receiver locations for photoacoustic image guidance during minimally invasive neurosurgeries  to be presented by Michelle Graham in the session entitled Machine Learning and Image Reconstruction Approaches in Photoacoustics on Monday, October 7, 9:30am-4:00pm
  4. One-Step Deep Learning Approach to Ultrasound Image Formation and Image Segmentation with a Generative Adversarial Network to be presented by Arun Nair in the session entitled Image Fusion and Registration on Tuesday, October 8, 9:30am-4:00pm

Congrats to Alycen, Eduardo, Michelle, and Arun!

Symposium website: https://attend.ieee.org/ius-2019/

Prof. Bell Wins ORAU Ralph E. Powe Junior Faculty Enhancement Award

Congratulations to Prof. Bell, who was selected to receive a competitive ORAU Ralph E. Powe Junior Faculty Enhancement Award, which is designed to help ORAU member institutions retain their best young faculty members. This award will provide seed funding for the project entitled, Robust Short-Lag Spatial Coherence Imaging of Hypoechoic Breast Masses, which focuses on development and patient testing of a novel beamforming method developed in the PULSE Lab to differentiate fluid-filled masses from solid breast masses with greater certainty than the current ultrasound beamforming methods used in breast clinics today. Fluid-filled masses are often benign, but with current uncertainty rates, many fluid-filled masses undergo the same costly, time-consuming, and anxiety-provoking diagnostic work-ups as malignant masses, which are often solid.

The long-term goal of this research is to improve breast cancer screening and detection for the benefit of patients and for the redistribution of more healthcare system resources to cancer patients who need them most.

Related Highlights:

ORAU Press Release

ECE Department Announcement

Malone Center Announcement

Kelley Kempski Wins NSF GRFP Fellowship

Kelley Kempski, an undergraduate researcher in the PULSE Lab during Summer 2018 and winner of the NSF CSMR REU Best Presentation Award, received one of the highly competitive NSF GRFP Fellowships. We are excited to welcome Kelley back to our lab this fall! Kelley was admitted into the Johns Hopkins BME PhD program, and we are thrilled that she has chosen to pursue her graduate studies with us.

Muyinatu Bell named Maryland’s Outstanding Young Engineer

Congratulations to Prof. Bell who was named as Maryland’s Outstanding Young Engineer by the Maryland Academy of Sciences and the Maryland Science Center. This award recognizes,  encourages, and increases public awareness of the important work and accomplishments of young engineers, age 35 and under, residing in the state of Maryland.  Important factors in the final decision are the recipient’s contributions to the advancement of his or her field of research, the possibility that this work could become a game changer, and the prospect of the recipient to rise to national and international prominence in the next 5-10 years.  

Prof. Bell is recognized for her pioneering and innovative contributions to the field of photoacoustic-guided surgery. These innovations include novel light delivery systems that attach to surgical tools, coherence-based and deep learning beamforming techniques to clarify images, and integration of photoacoustic imaging systems with surgical and interventional robots. The award is accompanied by the Allan C. Davis medal and a cash prize.

Maryland Science Center Press Release

ECE Department Announcement

Whiting School of Engineering Announcement

Malone Center Announcement

JHU Hub Announcement

YouTube Video

Alycen Wins Whiting School of Engineering Research Trainee Award

Congratulations to Alycen Wiacek! She won the Whiting School of Engineering Trainee Award at the DOM/WSE Hopkins Research Retreat, a joint retreat with the Department of Medicine (DOM) and Whiting School of Engineering (WSE), which took place on Friday, March 1, 2019 at the School of Medicine’s East Baltimore Campus. This award highlights one graduate student or postdoc within the WSE who submits a written statement clearly explaining the broad significance of his or her research to engineering, the major research hypothesis or question, the research approach and findings, and the relationship between this research and the applicant’s early career goals. Alycen presented her work on Coherence-Based Beamforming to Improve the Diagnostic Power of Breast Ultrasound Imaging. She was one of five finalists from multiple engineering departments across WSE.

Prof. Efie Kokkoli from the JHU Department of Chemical and Biomolecular Engineering announced and presented Alycen with the award, which includes a $500 prize.

Also at the retreat, the PULSE Lab was recognized as one of three finalists for the WSE Lab Excellence Award. The lab was well represented with excellent poster presentations by Alycen, Eduardo, and Derek:

ECE Department Announcement

JHU ECE Facebook Post

Medicine Matters Blog Post

Prof. Bell Named 2019 Alfred P. Sloan Research Fellow

Congratulations to Prof. Muyinatu Bell who was selected by the Alfred P. Sloan Foundation as a 2019 Sloan Research Fellow in Physics. The Sloan Research Fellowships are provided to stimulate fundamental research by early-career scientists and scholars of outstanding promise. These two-year fellowships are awarded in recognition of distinguished performance and the unique potential of recipients to make substantial contributions to their field. A total of 126 Sloan Research Fellowships are awarded annually with only 23 awarded in Physics this year.

“Sloan Research Fellows are the best young scientists working today,” says Adam F. Falk, president of the Alfred P. Sloan Foundation. “Sloan Fellows stand out for their creativity, for their hard work, for the importance of the issues they tackle, and the energy and innovation with which they tackle them. To be a Sloan Fellow is to be in the vanguard of twenty-first century science.”

The 2019 Sloan Research Fellows each receive a two-year fellowship in the amount of $70,000 to further their research.

Sloan Foundation Press Release

JHU Hub Announcement

ECE Department Announcement

Malone Center Announcement

Whiting School of Engineering Announcement

HEMI Announcement

Journal Paper Accepted to IEEE T-UFFC

Congratulations to Alycen Wiacek! Her first-author journal paper entitled “Robust Short-Lag Spatial Coherence Imaging of Breast Ultrasound Data: Initial Clinical Results” was accepted to the IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. This paper will appear in the Special Issue on Pilot Clinical Translation of New Medical Ultrasound Methodologies.

This work is the first to investigate the application of short-lag spatial coherence (SLSC) imaging — and two new variations of this method developed in our lab (i.e., M-Weighted SLSC imaging and Robust SLSC imaging) — to breast ultrasound data. The two newer approaches revisit the lag summation step of SLSC imaging to achieve additional robustness to coherence outliers through weighted summation of individual coherence images (i.e., M-weighting) and through the application of robust principal component analysis (i.e., Robust SLSC, or R-SLSC).

An interesting finding from this initial investigation is that solid breast masses, which appear hypoechoic in traditional B-mode images, have similarly high coherence to that of surrounding tissue in these coherence-based images. This finding represents the first known instance of this phenomenon in hypoechoic ultrasound data from any type of tissue (including simulated, phantom, and in vivo liver data). This work shows great promise for implementing SLSC, M-Weighted SLSC, and/or R-SLSC imaging to distinguish between fluid-filled and solid hypoechoic breast masses, which has implications for improved breast cancer detection and screening, more streamlined diagnostic work ups, and reduced patient anxiety over suspicious breast mass findings.

Citation: A Wiacek, OMH Rindal, E Falomo, K Myers, K Fabrega-Foster, S Harvey, MAL Bell, Robust Short-Lag Spatial Coherence Imaging of Breast Ultrasound Data: Initial Clinical Results, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control, accepted November 20, 2018 [pdf]

Also Available on Journal Website: https://ieeexplore.ieee.org/document/8548567

Journal Paper Published in Scientific Reports

Our journal paper entitled Photoacoustic-based visual servoing of a needle tip was accepted for publication in Scientific Reports. Check out this video for a demonstration of our robotic photoacoustic assistant!

Citation: Bell MAL, Shubert J, Photoacoustic-based visual servoing of a needle tip, Scientific Reports, 8:15519, 2018 [pdf]

Journal Paper Accepted to Biomedical Optics Express

Our journal paper entitled Additive noise models for photoacoustic spatial coherence theory was accepted for publication in Biomedical Optics Express. This paper introduces two noise models for photoacoustic spatial coherence theory that compare favorably with experimental measurements. It will appear in the journal’s feature issue Topics in Biomedical Optics from the OSA Biophotonics Congress 2018.

Citation: B Stephanian, MT Graham, H Hou, MAL Bell, Additive noise models for photoacoustic spatial coherence theory, Biomedical Optics Express, 9(11):5566-5582, 2018 [pdf]

Five Abstracts Accepted to SPIE Photonics West

Five PULSE Lab abstracts were accepted to SPIE Photonics West. This conference will take place February 2-7, 2019 at the The Moscone Center in San Francisco, California.

  1. Simultaneous visualization of nerves and blood vessels with multispectral photoacoustic imaging for intraoperative guidance of neurosurgeries
    Michelle Graham, Joanna Guo, Muyinatu A. Lediju Bell

    4 February 2019 • 11:30 – 11:50 AM

  2. Techniques to distinguish the ureter from the uterine artery in photoacoustic-guided hysterectomies
    Alycen Wiacek, Karen Wang, Muyinatu A. Lediju Bell

    5 February 2019 • 6:00 – 8:00 PM

  3. Visualization of custom drill bit tips in a human vertebra for photoacoustic-guided spinal fusion surgeries
    Eduardo Gonzalez, Alycen Wiacek, Muyinatu A. Lediju Bell

    5 February 2019 • 6:00 – 8:00 PM

  4. In vivo demonstration of photoacoustic-guided liver surgery
    Kelley Kempski, Alycen Wiacek, Jasmin E. Palmer, Michelle Graham, Eduardo Gonzalez, Bria Goodson, Derek Allman, Huayu Hou, Sarah Beck, Jin He, Muyinatu A. Lediju Bell

    5 February 2019 • 6:00 – 8:00 PM

  5. A deep learning-based approach to identify in vivo catheter tips for photoacoustic-guided cardiac interventions
    Derek Allman, Fabrizio Assis, Jonathan Chrispin, Muyinatu A. Lediju Bell

    5 February 2019 • 6:00 – 8:00 PM

This work spans two tracks within the BiOS Conference:

Photonics West BiOS Conference website: https://spie.org/conferences-and-exhibitions/photonics-west/bios

Kelley Kempski Wins Best Presentation Award

Congratulations to PULSE Lab summer undergraduate student Kelley Kempski who won the best presentation award at the closing ceremonies for the NSF-funded REU program in Computational Sensing and Medical Robotics. Her presentation was entitled In Vivo Photoacoustic Image Guidance of Abdominal Surgery. Prof. Jerry Prince announced the award and congratulated Kelley on this great achievement.

Kelley’s award continues the 4-year winning streak of previous PULSE Lab winners and mentees of Prof. Bell in the NSF CSMR REU Program:

  • Kelley Kempski (2018)
  • Margaret Allard (2017)
  • Blackberrie Eddins (2016)
  • Alicia Dagle (2015)

Special thanks to Kelley’s graduate student mentor, Alycen Wiacek.

LCSR Announcement

ECE Department Announcement

Mechanical Engineering Department Announcement

Prof. Bell Receives NIH Trailblazer Award

Prof. Bell received the NIH Trailblazer Award from the National Institute of Biomedical Imaging and Bioengineering to support our project entitled, A Machine Learning Alternative to Beamforming to Improve Ultrasound Image Quality for Interventional Access to the Kidney. This project is motivated by the clinical challenges surrounding artifacts in ultrasound images, specifically artifacts caused by multipath scattering and acoustic reverberations (which occur when imaging through the abdominal tissue of overweight and obese patients or visualizing metallic surgical tools). There are no existing solutions to eliminate these artifacts based on today’s signal processing techniques. The goal of this project is to step away from conventional signal processing models and instead learn from raw ultrasound channel data examples with state-of-the-art deep learning techniques that differentiate artifacts from true signals to deliver a new class of clearer, easier-to-interpret ultrasound images that we call CNN-Based images. This work will be completed in collaboration with Austin Reiter, PhD and Kelvin Hong, MD.

Two of our pioneering publications in this area include:

  • D Allman, A Reiter, MAL Bell, Photoacoustic source detection and reflection artifact removal enabled by deep learning, IEEE Transactions on Medical Imaging, 37(6):1464-1477, 2018 [pdf | datasets code]
  • AA Nair, T Tran, A Reiter, MAL Bell, A deep learning based alternative to beamforming ultrasound images, IEEE International Conference on Acoustics, Speech and Signal Processing, Calgary, Alberta, Canada, April 15-20, 2018 [pdf]
  • Additional related publications are featured here

This work has also been featured in the following articles and press releases:

We additionally have a pending patent for these ideas.

ECE Department Announcement

Whiting School of Engineering Announcement

LCSR Announcement

Malone Center for Engineering in Healthcare Announcement

HEMI Announcement

JHU Hub Announcement

JHU Engineering Magazine

Johns Hopkins Magazine

Alycen Wiacek Receives Student Travel Award to IEEE IUS 2018

PULSE Lab grad student Alycen Wiacek was selected by the IEEE International Ultrasonics Symposium Organization Committee to receive a Student Travel Award to attend the 2018 IEEE International Ultrasonics Symposium taking place October 22-25, 2018 at the Portopia Hotel, in Kobe, Japan. Alycen will give an oral presentation on her work entitled Clinical Feasibility of Coherence-Based Beamforming to Distinguish Solid from Fluid Hypoechoic Breast Masses. Congratulations Alycen!

Four Abstracts Accepted to IEEE IUS 2018

Four PULSE Lab abstracts were accepted for presentation during the 2018 IEEE International Ultrasonics Symposium (IUS) to be held on October 22-25, 2018, at the Portopia Hotel in Kobe, Japan.

  1. A fully convolutional neural network for beamforming ultrasound images to be presented by Arun Nair in the session entitled Deep Neural Networks for Ultrasound Image Formation at 2:15 PM to 2:30 PM on Thursday, October 25 (label: 1J-4)
  2. Clinical feasibility of coherence-based beamforming to distinguish solid from fluid hypoechoic breast masses to be presented by Alycen Wiacek in the session entitled  Beamforming for Other Applications from 9:00 AM to 9:15 AM on Thursday, October 25 (label: 4H-5)
  3.  Segmenting bone structures in ultrasound images with Locally Weighted SLSC (LW-SLSC) beamforming  to be presented by Eduardo Gonzalez in the session entitled  Beamforming for Other Applications from 8:00 AM to 8:15 AM on Thursday, October 25 (label: 4H-1)
  4. Using deep neural networks to remove photoacoustic reflection artifacts in ex vivo tissue to be presented by Derek Allman in the session entitled All-Optical Photoacoustic Imaging and Computational Approaches on Tuesday, October 23 (label: P2-A6-4)

Congrats to Arun, Alycen, Eduardo, and Derek!

Symposium website: http://sites.ieee.org/ius-2018/

Journal Paper Accepted to Physics in Medicine and Biology

Our journal paper entitled Photoacoustic imaging of a human vertebra: implications for guiding spinal fusion surgeries was accepted for publication in Physics in Medicine and Biology. This paper will appear in the journal’s special issue Focus on Interventional Photoacoustic Imaging.  The accepted version of the manuscript is currently accessible online (ahead of print).

Citation: J Shubert and MAL Bell, Photoacoustic imaging of a human vertebra: Implications for guiding spinal fusion surgeries, Physics in Medicine and Biology (accepted) [pdf]

Prof. Bell Receives JHU Discovery Award

Dr. Muyinatu Bell and gynecologic surgeon collaborator Dr. Karen Wang were among the 30 interdisciplinary faculty teams at Johns Hopkins selected to receive one of the 2018 JHU Discovery Awards. This award is designed to support cross-divisional research teams who are poised to arrive at important discoveries or creative works. The expectation is that these awards will spark new, synergistic interactions between investigators across the institution and lead to work of the highest quality and impact. This award will support their research topic of “Photoacoustic Image Guidance of Gynecological Surgeries.”

JHU Hub Celebration Coverage

JHU Office of Research Announcement

JHU Hub Announcement

Malone Center Announcement

HEMI Announcement

Whiting School of Engineering Announcement

ECE Department Announcement

Prof. Bell selected to participate in the National Academy of Engineering’s US Frontiers of Engineering Symposium

Prof. Bell is one of 84 “outstanding early career engineers” selected to meet for an intensive 2-1/2 day symposium to discuss cutting-edge developments in four engineering areas at the National Academy of Engineering’s 2018 US Frontiers of Engineering Symposium. This symposium will be hosted by MIT Lincoln Laboratory in Lexington, Massachusetts, September 5-7, 2018.

ECE Department Announcement

Malone Center Announcement

NAE Announcement

Journal Paper Accepted to IEEE TMI

Congratulations to Derek Allman! His paper entitled “Photoacoustic Source Detection and Reflection Artifact Removal Enabled by Deep Learning” was accepted to the IEEE Transactions on Medical Imaging. This paper is expected to appear in the Special Issue on Machine Learning for Image Reconstruction.

This work is the first to use deep convolutional neural networks (CNNs) as an alternative to the photoacoustic beamforming and image reconstruction process. We used simulations to train CNNs to identify sources and reflection artifacts in raw photoacoustic channel data, reformatted the network outputs to usable images that we call CNN-Based images, and transferred these trained networks to operate on experimental data. Multiple parameters were varied during training (e.g., channel noise, number of sources, number of artifacts, sound speed, signal amplitude, transducer model, lateral and axial locations of sources and artifacts, and spacing between sources and artifacts). The classification accuracy of simulation and experimental data  ranged from 96-100% when the channel signal-to-noise ratio was -9 dB or greater and when sources were located in trained locations. Over 99% of the results had submillimeter location accuracy. Our CNN-Based images have high contrast,  no artifacts, and resolution that rivals the traditional photoacoustic image resolution of low-frequency ultrasound probes.

Citation: D Allman, A Reiter, MAL Bell, Photoacoustic Source Detection and Reflection Artifact Removal Enabled by Deep Learning, IEEE Transactions on Medical Imaging, 37(6):1464-1477, 2018 [pdf | datasets code]

Paper Accepted to IEEE ICASSP

Congratulations to Arun Nair on the acceptance of his manuscript to the IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

Paper ID: 3434
Title: A DEEP LEARNING BASED ALTERNATIVE TO BEAMFORMING ULTRASOUND IMAGES
Session Title: ‘SAM Poster Session 4: Beamforming’
Authors: AA Nair, T Tran, A Reiter, MAL Bell

This conference will take place 15–20 April 2018.

[Preprint Available]

Prof. Bell Receives NSF CAREER Award

Congratulations to Prof. Bell for being selected to receive the NSF CAREER Award. The Faculty Early Career Development (CAREER) Program is a Foundation-wide activity that offers the National Science Foundation’s most prestigious awards in support of early-career faculty who have the potential to serve as academic role models in research and education and to lead advances in the mission of their department or organization.  The objective of Prof. Bell’s proposal entitled CAREER: Technical & Theoretical Foundations for Photoacoustic-Guided Surgery is to apply optical analyses, spatial coherence theory, and independent resolution models to describe fundamental performance limits of photoacoustic-based navigation during robotic and nonrobotic surgery.

ECE Department Announcement

Malone Center Announcement

WSE Announcement

JHU Hub Announcement

LCSR Announcement

JMI Paper Accepted

Congrats to undergraduate student Margaret Allard on the acceptance of her first-author journal paper entitled Feasibility of photoacoustic-guided teleoperated hysterectomies. This paper will appear in the Journal of Medical Imaging (JMI) Special Section on Image-Guided Procedures, Robotic Interventions, and Modeling.

This paper is the first to describe the feasibility of photoacoustic integration with the da Vinci surgical robot to potentially guide minimally invasive hysterectomies and other gynecological surgeries.  To implement photoacoustic imaging, a novel light delivery system was designed and implemented  to surround da Vinci tools. This new light delivery system uniquely enabled the investigations described in the paper, including  the first known analysis of the optimal tool orientations for photoacoustic-guided hysterectomies using a da Vinci scissor tool (which partially blocks the transmitted light in some cases). This work can be extended to other da Vinci tools and laparoscopic instruments with similar tip geometry.

Margaret completed this work through her participation in our NSF Research Experience for Undergraduates in Computational Sensing and Medical Robotics.

Brooke Wins Second Place in Undergrad Poster Competition

Congratulations to PULSE Lab undergraduate student Brooke Stephanian on her 2nd place win in the Optics and Photonics Conference at JHU! She presented a poster that summarized the work she completed this semester on the topic “Theoretical Simulation to Optimize Short-Lag Spatial Coherence (SLSC) Photoacoustic Image Quality”.

Conference website: https://engineering.jhu.edu/ece/osa/hopkins-photonics-conference/

Journal Paper Accepted to IEEE T-UFFC

Congrats to Arun Nair on the acceptance of his paper entitled “Robust Short-Lag Spatial Coherence Imaging” to the IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control. This paper will appear in the special issue on sparsity driven methods in medical ultrasound.

This work is the first to re-examine the lag summation step of the Short-Lag Spatial Coherence (SLSC) algorithm and achieve additional robustness to coherence outliers through both weighted summation of individual coherence images (i.e., M-weighting) and the application of robust principal component analysis (i.e., Robust SLSC, or R-SLSC). Results show great promise for smoothing out the tissue texture of SLSC images, improving boundary delineation, and enhancing anechoic or hypoechoic target visibility at higher lag values. These improvements could be useful in clinical tasks such as breast cyst visualization, liver vessel tracking, and obese patient imaging.

Citation: AA Nair, T Tran, MAL Bell, Robust Short-Lag Spatial Coherence Imaging, IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control (accepted) [pdf]

Also Available on Journal Website: http://ieeexplore.ieee.org/document/8166807/

Two PULSE Lab abstracts accepted to OSA Optics and Photonics Conference at JHU

Congrats to undergraduate student Brooke Stephanian and PhD student Derek Allman! Their abstracts were accepted to the 2017 Optics and Photonics Conference at Johns Hopkins University.

Brooke will present a poster entitled: Theoretical Simulation to Optimize Short-Lag Spatial Coherence (SLSC) Photoacoustic Image Quality 

Derek will give a presentation entitled: Using convolutional neural networks to eliminate reflection artifacts in experimental photoacoustic images

Conference details: https://engineering.jhu.edu/ece/osa/hopkins-photonics-conference/

Free registration: https://www.eventbrite.com/e/optics-and-photonics-conference-at-johns-hopkins-university-tickets-39142374897?aff=es2

SPIE Medical Imaging Paper Accepted

Our paper, “Feasibility of photoacoustic guided hysterectomies with the da Vinci robot,” was accepted for Oral presentation at SPIE Medical Imaging in the Image-Guided Procedures, Robotic Interventions, and Modeling conference.

Session 2
Keynote and Medical Robotics

Tuesday 13 February 2018
10:10 AM – 12:10 PM

Feasibility of photoacoustic guided hysterectomies with the da Vinci robot
Paper 10576-9
Authors: Margaret Allard, Joshua Shubert, Muyinatu A. Lediju Bell

Congrats to Margaret, Josh, and Prof. Bell!

Three Abstracts Accepted to SPIE Photonics West

Three PULSE Lab abstracts were accepted to SPIE Photonics West in the BiOS Conference Track: Photons Plus Ultrasound: Imaging and Sensing 2018 (Conference 10494). This conference track will take place Sunday- Wednesday  January -28-31, 2018 at the The Moscone Center in San Francisco, California.

  1. A novel drill design for photoacoustic guided surgeries 
    Paper 10494-18
    Authors: Joshua Shubert, Muyinatu Bell
    Session 3: Therapy Monitoring and Guidance II
    Sunday 28 January 2018
    1:30 PM – 2:45 PM
  2. Using convolutional neural networks to eliminate reflection artifacts in experimental photoacoustic images
    Paper 10494-190
    Authors: Derek Allman, Austin Reiter, Muyinatu Bell
    Session PTue: Posters-Tuesday
    Tuesday 30 January 2018
    6:00 PM – 8:00 PM
  3. Development and validation of a short-lag spatial coherence theory for photoacoustic imaging
    Paper 10494-193
    Authors: Michelle Graham, Muyinatu Bell
    Session PTue: Posters-Tuesday
    Tuesday 30 January 2018
    6:00 PM – 8:00 PM

Congrats to  Josh, Derek, and Michelle!

Conference track website: https://spie.org/PWB/conferencedetails/photons-plus-ultrasound

SLSC Beamforming Code Now Available on UltraSound Toolbox

The UltraSound Toolbox (USTB) is a free MATLAB toolbox for processing ultrasonic signals. The primary purpose of the USTB is to facilitate the comparison of imaging techniques and the dissemination of research results. The PULSE Lab is proud to collaborate on this effort to deliver SLSC beamforming to the broader ultrasound community. An example using the SLSC algorithm on a CIRS phantom and on human heart data was added today, as described here: http://www.ustb.no/examples/advanced-beamforming/short-lag-spatial-coherence-slsc/. The heart and phantom datasets and the SLSC code are now freely available to use. Additional datasets and beamforming code can be found by perusing the USTB website.

Congrats to Ole Marius Hoel Rindal (our visiting student from the University of Oslo) for putting in the work required to pull this together!

USTB Announcement

Margaret Allard Receives Best Presentation Award

Congratulations to PULSE Lab undergraduate student Margaret Allard who received the best presentation award from the NSF REU program in Computational Sensing and Medical Robotics. Her presentation was entitled Identifying Optimal da Vinci Tool Orientations for Photoacoustic Guided Hysterectomies. Prof. Jerry Prince presented Margaret with this award.

This award was shared by Margaret Allard and Mindy Wagenmaker.

JHU ECE Department Announcement

JBO Paper Accepted

Our paper entitled Photoacoustic-based approach to surgical guidance performed with and without a da Vinci robot was accepted for publication in the Journal of Biomedical Optics (JBO) Special Section on Translational Biophotonics.

Congrats to undergraduates Neeraj Gandhi and Margaret Allard!

This work was completed in partnership with the NSF REU in Computational Sensing and Medical Robotics along with collaborators Sungmin Kim and Peter Kazanzides, and it is the first to integrate photoacoustic imaging with the da Vinci surgical robot. It was also featured on the journal homepage.

ECE Department Announcement

BioOptics World Article

Three Abstracts Accepted to IEEE IUS 2017

Three PULSE Lab abstracts were accepted for presentation during the 2017 IEEE International Ultrasonics Symposium (IUS) to be held on September 6-9, 2017 at the Omni Shoreham Hotel, Washington D.C., USA.

  1. “Theoretical Application of Short-Lag Spatial Coherence to Photoacoustic Imaging” to be presented by Michelle Graham in the MBB: Non linear and coherence imaging poster session, 3-4 pm on Thursday, September 7, 2017. (Abstract ID: 1526)
  2. “Photoacoustic Visual Servoing of Needle Tips to Improve Biopsy Targeting in Obese Patients” to be presented by Joshua Shubert in the MPA: Technical Developments in Photoacoustic Imaging poster session, 3-4 pm  on Friday, September 8, 2017. (Abstract ID: 1088)
  3. “Identification and removal of reflection artifacts in photoacoustic images using convolutional neural networks” to be presented by Derek Allman in the MIM: Machine learning poster session, 9:30-10:30 am on Saturday, September 9, 2017. (Abstract ID: 1523)

Congrats to Michelle, Josh, and Derek!

Symposium website: http://ewh.ieee.org/conf/ius/2017/

REU student wins first place award

Congratulations to PULSE Lab undergraduate student Blackberrie Eddins for winning the first place final presentation award in the 2016 NSF Computational Sensing and Medical Robotics (CSMR) Research Experience for Undergraduates (REU) program at JHU! She tied in first place for this award with Luke Arend, another student participant.